This BLAST server is locally run and not part of NCBI. Only specific databases are offered here for BLAST.

Choose program to use and database to search:

Program blastn blastp blastx tblastn tblastx

Database

Filter Database List

Plants - P450s, Amino Acid Arabidopsis - P450s, ESTs+cDNAs+genomic Arabidopsis - P450s, EST Arabidopsis - P450s, cDNA Arabidopsis - P450s, Genomic Arabidopsis - P450s, Amino Acids Arabidopsis - UGTs, Amino Acids Arabidopsis - UGTs, ESTs Arabidopsis - UGTs, ESTs+Genomic+cDNAs Arabidopsis - UGTs, Genomic Arabidopsis - UGTs, cDNAs Arabidopsis - cyotchromes b5 and ATRs, Protein Arabidopsis - cyotchromes b5 and ATRs, Genomic Arabidopsis - cyotchromes b5 and ATRs, cDNAs Arabidopsis - cyotchromes b5 and ATRs, cDNAs+Genomic

Case-sensitive

Enter sequence below in FASTA format

Or load it from disk

Set subsequence:
From To

---

The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect 0.0001 0.01 1 10 100 1000    Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment

Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)

Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)

Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF

Other advanced options:     

---

Graphical Overview    Alignment view Pairwise master-slave with identities master-slave without identities flat master-slave with identities flat master-slave without identities BLAST XML Hit Table
Descriptions 0 10 50 100 250 500    Alignments 0 10 50 100 250 500 Color schema No color schema Color schema 1 Color schema 2 Color schema 3 Color schema 4 Color schema 5 Color schema 6